Package: eoa3 1.0.0.2

eoa3: Wildlife Mortality Estimator for Low Fatality Rates and Imperfect Detection

Evidence of Absence software (EoA) is a user-friendly application for estimating bird and bat fatalities at wind farms and designing search protocols. The software is particularly useful in addressing whether the number of fatalities has exceeded a given threshold and what search parameters are needed to give assurance that thresholds were not exceeded. The models are applicable even when zero carcasses have been found in searches, following Huso et al. (2015) <doi:10.1890/14-0764.1>, Dalthorp et al. (2017) <doi:10.3133/ds1055>, and Dalthorp and Huso (2015) <doi:10.3133/ofr20151227>.

Authors:Daniel Dalthorp [aut, cre]

eoa3_1.0.0.2.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
eoa3/json (API)

# Install 'eoa3' in R:

install.packages('eoa3', repos = c('https://ddalthorp.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

jags– Just Another Gibbs Sampler for Bayesian MCMC
c++– GNU Standard C++ Library v3

Datasets:

cpdata0 - A template for carcass persistence data with interval-censored carcass persistence times
days0 - A template for search schedule data
pkdata0 - A template for summarized searcher efficiency data with the number of carcasses available and the number discovered for N = 12 search occasions

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

jags cpp

1.00 score 593 downloads 13 exports 61 dependencies

Last updated from:e83ff0bf54. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	135
source / vignettes	OK	186
linux-release-x86_64	OK	124
macos-release-arm64	OK	115
macos-oldrel-arm64	OK	99
windows-devel	OK	76
windows-release	OK	81
windows-oldrel	OK	69
wasm-release	OK	153

Exports:calcMstar est_cp0 est_g0 est_pk0 fmmax fmmax.ab getab MCI MpriorOK postM postM.ab sim_cp0 sim_pk0

Dependencies:actuar base64enc bslib cachem cli coda commonmark cpp11 crosstalk digest DT evaluate expint fastmap fontawesome fs generics GenEst glue gsl gtools hellno highr htmltools htmlwidgets httpuv jquerylib jsonlite knitr later lattice lazyeval lifecycle lubridate magrittr MASS Matrix matrixStats memoise mime mvtnorm otel promises R6 rappdirs Rcpp rjags rlang rmarkdown sass shiny shinyjs sourcetools survival timechange tinytex VGAM withr xfun xtable yaml

Help page	Topics
A template for carcass persistence data with interval-censored carcass persistence times	cpdata0
A template for search schedule data	days0
Evidence of Absence	eoa3
Fit cp carcass persistence models	est_cp0
estimate g from fitted pk and cp models and search schedule	est_g0
Fit pk searcher efficiency models	est_pk0
Find suitable mmax for clipping improper priors for M	fmmax fmmax.ab
retrieve EoA parameterization from 'survival' parameterization of a fitted cp model (or 'survreg' object with exponential, weibull, lognormal, or loglogistic distribution)	getab
Check validity of format of custom prior for M	MpriorOK
A template for summarized searcher efficiency data with the number of carcasses available and the number discovered for N = 12 search occasions	pkdata0
Calculate posterior distribution of M and extract statistics (M* and CI)	calcMstar MCI postM postM.ab
generate random cp parameters or persistence times	sim_cp0
Simulate pk parameters from model	sim_pk0
Summary statistics for estimated g	summary.estg
Summary statistics for estimated p and p parameters	summary.estpk

Package: eoa3 1.0.0.2

eoa3: Wildlife Mortality Estimator for Low Fatality Rates and Imperfect Detection

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)