{ "_id": "6ac215dd773a0037682c1ade", "Package": "eoa3", "Title": "Wildlife Mortality Estimator for Low Fatality Rates and\nImperfect Detection", "Version": "1.0.0.2", "Date": "2024-11-19", "Authors@R": "person(\"Daniel\", \"Dalthorp\", email = \"ddalthorp@protonmail.com\", role = c(\"aut\", \"cre\"))", "Description": "Evidence of Absence software (EoA) is a user-friendly\napplication for estimating bird and bat fatalities at wind\nfarms and designing search protocols. The software is\nparticularly useful in addressing whether the number of\nfatalities has exceeded a given threshold and what search\nparameters are needed to give assurance that thresholds were\nnot exceeded. The models are applicable even when zero\ncarcasses have been found in searches, following Huso et al.\n(2015) , Dalthorp et al. (2017)\n, and Dalthorp and Huso (2015)\n.", "License": "GPL-2", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-04 08:53:33 UTC", "User": "root" }, "Author": "Daniel Dalthorp [aut, cre]", "Maintainer": "Daniel Dalthorp ", "Config/pak/sysreqs": "cmake make libgsl0-dev jags libuv1-dev zlib1g-dev", "Repository": "https://ddalthorp.r-universe.dev", "Date/Publication": "2024-11-19 18:50:17 UTC", "RemoteUrl": "https://github.com/cran/eoa3", "RemoteRef": "HEAD", "RemoteSha": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "_user": "ddalthorp", "_type": "src", "_file": "eoa3_1.0.0.2.tar.gz", "_fileid": "https://r2.ropensci.org/de14f1c998421a0bcd8c757435408a5d41116a6be3d0670805d0812b548e9fef", "_filesize": 187934, "_sha256": "de14f1c998421a0bcd8c757435408a5d41116a6be3d0670805d0812b548e9fef", "_expires": "2027-01-12T09:01:15.000Z", "_created": "2026-10-04T08:53:33.000Z", "_published": "2026-10-04T09:01:17.344Z", "_jobs": [ { "job": 111401171943, "time": 114, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11299031063" }, { "job": 111401171905, "time": 109, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11299125437" }, { "job": 111401171949, "time": 164, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11299081304" }, { "job": 111401171963, "time": 175, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11299151290" }, { "job": 111400500339, "time": 255, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11298711534" }, { "job": 111401171941, "time": 107, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11299250329" }, { "job": 111401171923, "time": 81, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11299056044" }, { "job": 111401171976, "time": 66, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11299355146" }, { "job": 111401171975, "time": 63, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11298631902" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/37190151620", "_status": "success", "_upstream": "https://github.com/cran/eoa3", "_commit": { "id": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "author": "Daniel Dalthorp ", "committer": "cran-robot ", "message": "version 1.0.0.2\n", "time": 1732042217 }, "_maintainer": { "name": "Daniel Dalthorp", "email": "ddalthorp@protonmail.com", "login": "ddalthorp", "description": "", "uuid": 30092223 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "actuar", "role": "Imports" }, { "package": "GenEst", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "rjags", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "VGAM", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "ddalthorp", "count": 3, "uuid": 30092223 } ], "_userbio": { "uuid": 30092223, "type": "user", "name": "ddalthorp", "followers": 3 }, "_downloads": { "count": 485, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/eoa3" }, "_searchresults": 0, "_topics": [ "jags", "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/eoa3.html", "extra/manual.pdf" ], "_realowner": "ddalthorp", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2023-01-16" }, { "version": "1.0.0.1", "date": "2023-07-04" }, { "version": "1.0.0.2", "date": "2024-11-19" } ], "_exports": [ "calcMstar", "est_cp0", "est_g0", "est_pk0", "fmmax", "fmmax.ab", "getab", "MCI", "MpriorOK", "postM", "postM.ab", "sim_cp0", "sim_pk0" ], "_datasets": [ { "name": "cpdata0", "title": "A template for carcass persistence data with interval-censored carcass persistence times", "object": "cpdata0", "class": [ "data.frame" ], "fields": [ "CPmin", "CPmax" ], "rows": 42, "table": true, "tojson": true }, { "name": "days0", "title": "A template for search schedule data", "object": "days0", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "pkdata0", "title": "A template for summarized searcher efficiency data with the number of carcasses available and the number discovered for N = 12 search occasions", "object": "pkdata0", "class": [ "list" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "cpdata0", "title": "A template for carcass persistence data with interval-censored carcass persistence times", "topics": [ "cpdata0" ] }, { "page": "days0", "title": "A template for search schedule data", "topics": [ "days0" ] }, { "page": "eoa3", "title": "Evidence of Absence", "topics": [ "eoa3" ] }, { "page": "est_cp0", "title": "Fit cp carcass persistence models", "topics": [ "est_cp0" ] }, { "page": "est_g0", "title": "estimate g from fitted pk and cp models and search schedule", "topics": [ "est_g0" ] }, { "page": "est_pk0", "title": "Fit pk searcher efficiency models", "topics": [ "est_pk0" ] }, { "page": "fmmax", "title": "Find suitable mmax for clipping improper priors for M", "topics": [ "fmmax", "fmmax.ab" ] }, { "page": "getab", "title": "retrieve EoA parameterization from 'survival' parameterization of a fitted cp model (or 'survreg' object with exponential, weibull, lognormal, or loglogistic distribution)", "topics": [ "getab" ] }, { "page": "MpriorOK", "title": "Check validity of format of custom prior for M", "topics": [ "MpriorOK" ] }, { "page": "pkdata0", "title": "A template for summarized searcher efficiency data with the number of carcasses available and the number discovered for N = 12 search occasions", "topics": [ "pkdata0" ] }, { "page": "postM", "title": "Calculate posterior distribution of M and extract statistics (M* and CI)", "topics": [ "calcMstar", "MCI", "postM", "postM.ab" ] }, { "page": "sim_cp0", "title": "generate random cp parameters or persistence times", "topics": [ "sim_cp0" ] }, { "page": "sim_pk0", "title": "Simulate pk parameters from model", "topics": [ "sim_pk0" ] }, { "page": "summary.estg", "title": "Summary statistics for estimated g", "topics": [ "summary.estg" ] }, { "page": "summary.estpk", "title": "Summary statistics for estimated p and p parameters", "topics": [ "summary.estpk" ] } ], "_rundeps": [ "actuar", "base64enc", "bslib", "cachem", "cli", "coda", "commonmark", "cpp11", "crosstalk", "digest", "DT", "evaluate", "expint", "fastmap", "fontawesome", "fs", "generics", "GenEst", "glue", "gsl", "gtools", "hellno", "highr", "htmltools", "htmlwidgets", "httpuv", "jquerylib", "jsonlite", "knitr", "later", "lattice", "lazyeval", "lifecycle", "lubridate", "magrittr", "MASS", "Matrix", "matrixStats", "memoise", "mime", "mvtnorm", "otel", "promises", "R6", "rappdirs", "Rcpp", "rjags", "rlang", "rmarkdown", "sass", "shiny", "shinyjs", "sourcetools", "survival", "timechange", "tinytex", "VGAM", "withr", "xfun", "xtable", "yaml" ], "_sysdeps": [ { "shlib": "libjags", "package": "jags", "headers": "jags", "source": "jags", "version": "4.3.2-2.2604.0", "name": "jags", "homepage": "https://mcmc-jags.sourceforge.io", "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 1, "_indexed": true, "_nocasepkg": "eoa3", "_universes": [ "ddalthorp" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0.2", "date": "2026-10-04T08:55:32.000Z", "distro": "resolute", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "https://r2.ropensci.org/2b9271d852ee00683f3c8ab04766bcdf4090709486f0ab9ff0a288bc2fee6ef9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/37190151620" }, { "r": "4.6.1", "os": "linux", "version": "1.0.0.2", "date": "2026-10-04T08:55:29.000Z", "distro": "resolute", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "https://r2.ropensci.org/c6e7443e49cc011cfffe123b5e9c6b1849c0d7f5b37e7294785a7d1ddf45db48", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/37190151620" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0.2", "date": "2026-10-04T08:58:26.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "https://r2.ropensci.org/7ad9bae8c12fe4664a0408a88bc5134db8247bbc44740beb3c4ba4d370d4cd84", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/37190151620" }, { "r": "4.6.1", "os": "mac", "version": "1.0.0.2", "date": "2026-10-04T08:59:29.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "https://r2.ropensci.org/b4e9a20c03c489d1f42edbca274053f2c03627f73ee7b1e85ca5c328ddafb0e0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/37190151620" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0.2", "date": "2026-10-04T08:55:42.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "https://r2.ropensci.org/c1de5a961f9cbb4c66750d74f95c5a0e7927b62ce9df22d3bf387190ecbaf4e6", "status": "success", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/37190151620" }, { "r": "4.7.0", "os": "win", "version": "1.0.0.2", "date": "2026-10-04T08:54:53.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "https://r2.ropensci.org/68078c3f5cbd99af91b4607eebc5b447e5afa8eae29100d160e038deb2c45360", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/37190151620" }, { "r": "4.5.3", "os": "win", "version": "1.0.0.2", "date": "2026-10-04T08:54:41.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "https://r2.ropensci.org/925b73a6422cf39066b80898f88be618c37926401db697b2cb3eec25d2bb0116", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/37190151620" }, { "r": "4.6.1", "os": "win", "version": "1.0.0.2", "date": "2026-10-04T08:54:41.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "https://r2.ropensci.org/36cd8bcfeb84a0dcc288c69cdd17b28ad47bd3616711cd098ee1c8f3a748c65d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/37190151620" } ] }