{ "_id": "6a107299acfb0bcc41cabfdf", "Package": "eoa3", "Title": "Wildlife Mortality Estimator for Low Fatality Rates and\nImperfect Detection", "Version": "1.0.0.2", "Date": "2024-11-19", "Authors@R": "person(\"Daniel\", \"Dalthorp\", email = \"ddalthorp@protonmail.com\", role = c(\"aut\", \"cre\"))", "Description": "Evidence of Absence software (EoA) is a user-friendly\napplication for estimating bird and bat fatalities at wind\nfarms and designing search protocols. The software is\nparticularly useful in addressing whether the number of\nfatalities has exceeded a given threshold and what search\nparameters are needed to give assurance that thresholds were\nnot exceeded. The models are applicable even when zero\ncarcasses have been found in searches, following Huso et al.\n(2015) , Dalthorp et al. (2017)\n, and Dalthorp and Huso (2015)\n.", "License": "GPL-2", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-07 06:15:44 UTC", "User": "root" }, "Author": "Daniel Dalthorp [aut, cre]", "Maintainer": "Daniel Dalthorp ", "Config/pak/sysreqs": "cmake make libgsl0-dev jags libuv1-dev zlib1g-dev", "Repository": "https://ddalthorp.r-universe.dev", "Date/Publication": "2024-11-19 18:50:17 UTC", "RemoteUrl": "https://github.com/cran/eoa3", "RemoteRef": "HEAD", "RemoteSha": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "MD5sum": "cdb2ec48a88a284c1597527f304fbe04", "_user": "ddalthorp", "_type": "src", "_file": "eoa3_1.0.0.2.tar.gz", "_fileid": "7440839e32ff60e55ce00397ee3536993ab508d6d7abef603c37da01797a0b25", "_filesize": 186915, "_sha256": "7440839e32ff60e55ce00397ee3536993ab508d6d7abef603c37da01797a0b25", "_created": "2026-05-07T06:15:44.000Z", "_published": "2026-05-22T15:13:29.750Z", "_distro": "noble", "_jobs": [ { 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"config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6848174268" } ], "_buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/25479122150", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/eoa3", "_commit": { "id": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "author": "Daniel Dalthorp ", "committer": "cran-robot ", "message": "version 1.0.0.2\n", "time": 1732042217 }, "_maintainer": { "name": "Daniel Dalthorp", "email": "ddalthorp@protonmail.com", "login": "ddalthorp", "uuid": 30092223 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "actuar", "role": "Imports" }, { "package": "GenEst", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "rjags", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "VGAM", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "ddalthorp", "count": 3, "uuid": 30092223 } ], "_userbio": { "uuid": 30092223, "type": "user", "name": "ddalthorp" }, "_downloads": { "count": 640, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/eoa3" }, "_searchresults": 0, "_topics": [ "jags", "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/eoa3.html", "manual.pdf" ], "_realowner": "ddalthorp", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2023-01-16" }, { "version": "1.0.0.1", "date": "2023-07-04" }, { "version": "1.0.0.2", "date": "2024-11-19" } ], "_exports": [ "calcMstar", "est_cp0", "est_g0", "est_pk0", "fmmax", "fmmax.ab", "getab", "MCI", "MpriorOK", "postM", "postM.ab", "sim_cp0", "sim_pk0" ], "_datasets": [ { "name": "cpdata0", "title": "A template for carcass persistence data with interval-censored carcass persistence times", "object": "cpdata0", "class": [ "data.frame" ], "fields": [ "CPmin", "CPmax" ], "rows": 42, "table": true, "tojson": true }, { "name": "days0", "title": "A template for search schedule data", "object": "days0", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "pkdata0", "title": "A template for summarized searcher efficiency data with the number of carcasses available and the number discovered for N = 12 search occasions", "object": "pkdata0", "class": [ "list" ], "fields": [], "table": true, "tojson": true } ], "_help": [ { "page": "cpdata0", "title": "A template for carcass persistence data with interval-censored carcass persistence times", "topics": [ "cpdata0" ] }, { "page": "days0", "title": "A template for search schedule data", "topics": [ "days0" ] }, { "page": "eoa3", "title": "Evidence of Absence", "topics": [ "eoa3" ] }, { "page": "est_cp0", "title": "Fit cp carcass persistence models", "topics": [ "est_cp0" ] }, { "page": "est_g0", "title": "estimate g from fitted pk and cp models and search schedule", "topics": [ "est_g0" ] }, { "page": "est_pk0", "title": "Fit pk searcher efficiency models", "topics": [ "est_pk0" ] }, { "page": "fmmax", "title": "Find suitable mmax for clipping improper priors for M", "topics": [ "fmmax", "fmmax.ab" ] }, { "page": "getab", "title": "retrieve EoA parameterization from 'survival' parameterization of a fitted cp model (or 'survreg' object with exponential, weibull, lognormal, or loglogistic distribution)", "topics": [ "getab" ] }, { "page": "MpriorOK", "title": "Check validity of format of custom prior for M", "topics": [ "MpriorOK" ] }, { "page": "pkdata0", "title": "A template for summarized searcher efficiency data with the number of carcasses available and the number discovered for N = 12 search occasions", "topics": [ "pkdata0" ] }, { "page": "postM", "title": "Calculate posterior distribution of M and extract statistics (M* and CI)", "topics": [ "calcMstar", "MCI", "postM", "postM.ab" ] }, { "page": "sim_cp0", "title": "generate random cp parameters or persistence times", "topics": [ "sim_cp0" ] }, { "page": "sim_pk0", "title": "Simulate pk parameters from model", "topics": [ "sim_pk0" ] }, { "page": "summary.estg", "title": "Summary statistics for estimated g", "topics": [ "summary.estg" ] }, { "page": "summary.estpk", "title": "Summary statistics for estimated p and p parameters", "topics": [ "summary.estpk" ] } ], "_rundeps": [ "actuar", "base64enc", "bslib", "cachem", "cli", "coda", "commonmark", "cpp11", "crosstalk", "digest", "DT", "evaluate", "expint", "fastmap", "fontawesome", "fs", "generics", "GenEst", "glue", "gsl", "gtools", "hellno", "highr", "htmltools", "htmlwidgets", "httpuv", "jquerylib", "jsonlite", "knitr", "later", "lattice", "lazyeval", "lifecycle", "lubridate", "magrittr", "MASS", "Matrix", "matrixStats", "memoise", "mime", "mvtnorm", "otel", "promises", "R6", "rappdirs", "Rcpp", "rjags", "rlang", "rmarkdown", "sass", "shiny", 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It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary." }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 1, "_indexed": true, "_nocasepkg": "eoa3", "_universes": [ "ddalthorp" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0.2", "date": "2026-05-07T06:18:00.000Z", "distro": "noble", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "9406ae644c1b9a7f75a2be0708ba5bb0fe2c9b8366e9fc9c489edef6c4f99849", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/25479122150" }, { "r": "4.6.0", "os": "linux", "version": "1.0.0.2", "date": "2026-05-07T06:17:57.000Z", "distro": "noble", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "9e4fc9f25fafb27a94fc2156e5ab75bebd9acf789db4a815d88729f92cf0818e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/25479122150" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0.2", "date": "2026-05-07T06:21:25.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "9056558a10d76ed819b891bd9835cdbca97a71f1c1d89c9f508e5fa4d2c64529", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/25479122150" }, { "r": "4.6.0", "os": "mac", "version": "1.0.0.2", "date": "2026-05-07T06:20:49.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "970f7f3351b4a916e2443312b50a11a863e203681d7a8ba56087fc5ff8ff9a60", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/25479122150" }, { "r": "4.7.0", "os": "win", "version": "1.0.0.2", "date": "2026-05-07T06:18:47.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "cad001c8b2fc632610f613b4054ee3957f328b9181e2ed29a2ab1ac951428f89", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/25479122150" }, { "r": "4.5.3", "os": "win", "version": "1.0.0.2", "date": "2026-05-07T06:16:53.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "09d404345a809bb63412c207e9c62f6ea7efc3b4cfbfc0ed902cfbc762411b38", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/25479122150" }, { "r": "4.6.0", "os": "win", "version": "1.0.0.2", "date": "2026-05-07T06:17:02.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "bc96c071c17c4351e845f76fa4899cf18653c5cf93ed4a5e8339024c122885d5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/25479122150" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0.2", "date": "2026-05-22T15:13:14.000Z", "commit": "e83ff0bf54261ef5aabd486989246f73b0a3aa6a", "fileid": "8ebc733dee31ad3c668995835bcf83735eebc1323b32618985f592e013275e02", "status": "success", "buildurl": "https://github.com/r-universe/ddalthorp/actions/runs/25479122150" } ] }