{ "_id": "6a181204acfb0bcc41daeab7", "Package": "dwp", "Type": "Package", "Title": "Density-Weighted Proportion", "Version": "1.2", "Date": "2026-01-27", "Authors@R": "c(\nperson(\"Daniel\", \"Dalthorp\", , \"ddalthorp@protonmail.com\", c(\"aut\", \"cre\")),\nperson(\"Manuela\", \"Huso\", , \"mhuso@usgs.gov\", \"aut\"))", "Description": "Fit a Poisson regression to carcass distance data and\nintegrate over the searched area at a wind farm to estimate the\nfraction of carcasses falling in the searched area and format\nthe output for use as the dwp parameter in the 'GenEst' or\n'eoa' package for estimating bird and bat mortality, following\nDalthorp, et al. 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"title": "Example Bare Vector Format for Eagle Data", "object": "layout_eagle", "class": [ "data.frame" ], "fields": [ "DateFound", "turbine", "r" ], "rows": 60, "table": true, "tojson": true }, { "name": "layout_polygon", "title": "Example Polygon Data for Site Layout", "object": "layout_polygon", "class": [ "data.frame" ], "fields": [ "turbine", "x", "y" ], "rows": 19, "table": true, "tojson": true }, { "name": "layout_simple", "title": "Example Simple Geometry Data Format for Site Layout", "object": "layout_simple", "class": [ "data.frame" ], "fields": [ "turbine", "radius", "shape", "padrad", "roadwidth", "n_road" ], "rows": 4, "table": true, "tojson": true }, { "name": "layout_xy", "title": "Example Data for Site Layout on an (x, y) Grid", "object": "layout_xy", "class": [ "data.frame" ], "fields": [ "x", "y", "ncarc", "r", "turbine" ], "rows": 1008, "table": true, "tojson": true }, { "name": "mod_all", "title": "Names of All the Available Models", "object": "mod_all", "class": [ 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Models with Natural Offset", "object": "natural", "class": [ "logical" ], "fields": [], "table": false, "tojson": true }, { "name": "par_default", "title": "Default Graphics Parameters", "object": "par_default", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "parm_name", "title": "List of Names of the Distribution Parameters Associated with Respective Models", "object": "parm_name", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "sieve_default", "title": "Test Criteria for Model Selection", "object": "sieve_default", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "sieve_win", "title": "Test Criteria for Model Selection within Search Area", "object": "sieve_win", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "xyr", "title": "Locations of All Carcasses in Grid Data", "object": "xyr", "class": [ "matrix", "array" ], "fields": [ "x", "y", "r" ], "rows": 100, "table": true, "tojson": true } ], "_help": [ { "page": "sub-.ddArray", "title": "Subset a Set of Fitted Dispersion Models ('ddArray')", "topics": [ "[.ddArray" ] }, { "page": "sub-.ddSim", "title": "Subset Simulated Dispersion Parameters while Preserving Attributes", "topics": [ "[.ddSim" ] }, { "page": "Acins", "title": "Calculate Area of Intersection inside Circle and Square with Common Center", "topics": [ "Acins" ] }, { "page": "addCarcass", "title": "Add Carcasses to a Site Layout", "topics": [ "addCarcass", "addCarcass.data.frame", "addCarcass.shapeCarcass" ] }, { "page": "aic", "title": "Calculate Akaike Information Criterion (AICc) for Distance Distributions", "topics": [ "aic", "aic.dd", "aic.ddArray", "aic.ddArraycc" ] }, { "page": "alt_names", "title": "Names of the Named Distributions", "topics": [ "alt_names" ] }, { "page": "carcass_polygon", "title": "Example Carcass Distances to Accompany the Polygon Layout Data Set", "topics": [ "carcass_polygon" ] }, { "page": "carcass_simple", "title": "Carcass Data to Accompany the Simple Geometry Data Format", "topics": [ "carcass_simple" ] }, { "page": "carcass_simple0", "title": "Full, Simulated carcass_simple Data Set (Including Locations and Missed Carcasses)", "topics": [ "carcass_simple0" ] }, { "page": "cof_name", "title": "Names of the GLM Coefficients for Each Distribution", "topics": [ "cof_name" ] }, { "page": "cof2parms", "title": "Convert GLM Coefficients into Named Distribution Parameters", "topics": [ "cof2parms", "cof2parms.dd", "cof2parms.matrix", "cof2parms.numeric", "parms2cof.matrix" ] }, { "page": "cofOK", "title": "Check Whether GLM Coefficients Give Proper Distribution", "topics": [ "cofOK", "cofOK0", "cofOKInf" ] }, { "page": "constraints", "title": "Constraints on GLM Coefficients for Extensibility to a Distribution", "topics": [ "constraints" ] }, { "page": "constraints_par", "title": "Constraints on Parameters to Assure Extensibility", "topics": [ "constraints_par" ] }, { "page": "dd2ddSim", "title": "Extract Parameters from a Distance Model ('dd') and Format as 'ddSim' Object", "topics": [ "dd2ddSim" ] }, { "page": "ddCI", "title": "Calculate CI for CDF, PDF, or quantile", "topics": [ "ddCI" ] }, { "page": "ddd", "title": "Calculate Probability Functions for Distance Distributions", "topics": [ "ddd", "pdd", "qdd", "rcd", "rdd" ] }, { "page": "ddFit", "title": "Fit Distance Distribution Model(s)", "topics": [ "ddFit", "ddFit.data.frame", "ddFit.list", "ddFit.rings", "ddFit.ringscc", "ddFit.xyLayout" ] }, { "page": "ddprint", "title": "Print S3 Objects in 'dwp' Package", "topics": [ "ddPrint", "print.dd", "print.ddArray", "print.fmod" ] }, { "page": "ddSim", "title": "Simulation of Dispersion Parameters", "topics": [ "ddSim", "ddSim.dd" ] }, { "page": "degOrder", "title": "An Ordering of the Models by Degree of the Polynomial", "topics": [ "degOrder" ] }, { "page": "distr_names", "title": "Full List of Names of Distributions", "topics": [ "distr_names" ] }, { "page": "Distributions", "title": "Probability Distributions for Carcasses Versus Distance from Turbine", "topics": [ "Distributions", "dmb", "dxep0", "dxep012", "dxep0123", "dxep02", "dxep1", "dxep12", "dxep123", "dxep2", "dxepi0", "pmb", "pxep0", "pxep012", "pxep0123", "pxep02", "pxep1", "pxep12", "pxep123", "pxep2", "pxepi0" ] }, { "page": "dwp", "title": "Density-Weighted Proportion", "topics": [ "dwp" ] }, { "page": "estdwp", "title": "Estimate DWP", "topics": [ "estdwp", "estdwp.psiHat", "estdwp.psiHatcc" ] }, { "page": "estpsi", "title": "Estimate Probability Carcass lands in Searched Area", "topics": [ "estpsi", "estpsi.data.frame", "estpsi.rdat", "estpsi.rings", "estpsi.ringscc", "estpsi.rpA", "estpsi.xyLayout" ] }, { "page": "exclude", "title": "Remove Particular Names from a Longer List", "topics": [ "exclude" ] }, { "page": "exportGenEst", "title": "Export Estimated Density-Weighted Proportion to File in Proper GenEst Format", "topics": [ "exportGenEst" ] }, { "page": "fmmax", "title": "Find suitable mmax for clipping improper priors for M", "topics": [ "fmmax", "fmmax.ab" ] }, { "page": "formatGenEst", "title": "Format DWP Estimate for Use in GenEst", "topics": [ "formatGenEst" ] }, { "page": "getncarc", "title": "Simple Function to Extract Carcass Counts", "topics": [ "getncarc", "getncarc.dd", "getncarc.ddArray", "getncarc.ddArraycc", "getncarc.rings", "getncarc.ringscc", "getncarc.xyLayout" ] }, { "page": "incGamma", "title": "Incomplete Gamma Function", "topics": [ "incGamma" ] }, { "page": "initLayout", "title": "Create a Data Structure or Map for the Site Layout", "topics": [ "initLayout" ] }, { "page": "junk", "title": "Section of Code that Serves No Purpose but for Package to Pass CRAN Check", "topics": [ "junk" ] }, { "page": "layout_eagle", "title": "Example Bare Vector Format for Eagle Data", "topics": [ "layout_eagle" ] }, { "page": "layout_polygon", "title": "Example Polygon Data for Site Layout", "topics": [ "layout_polygon" ] }, { "page": "layout_simple", "title": "Example Simple Geometry Data Format for Site Layout", "topics": [ "layout_simple" ] }, { "page": "layout_xy", "title": "Example Data for Site Layout on an (x, y) Grid", "topics": [ "layout_xy" ] }, { "page": "mod_all", "title": "Names of All the Available Models", "topics": [ "mod_all" ] }, { "page": "mod_color", "title": "Vector of Colors Used in Graphs of Fitted Models", "topics": [ "mod_color" ] }, { "page": "mod_lty", "title": "Vector of Line Types Used in Graphs of Fitted Models", "topics": [ "mod_lty" ] }, { "page": "mod_offset", "title": "Vector of GLM Offsets for Available Models", "topics": [ "mod_offset" ] }, { "page": "mod_standard", "title": "Vector of Names of Standard Models", "topics": [ "mod_standard" ] }, { "page": "mod_xy", "title": "Vector of Names of Models Available for Grid Layout", "topics": [ "mod_xy" ] }, { "page": "modelFilter", "title": "Run Models through a Sieve to Filter out Dubious Fits", "topics": [ "modelFilter" ] 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